Provides a detailed report on how well taxonomic labels can be parsed, including per-rank parse rates and failed labels.
Usage
summarize_taxonomy_quality(
labels,
format = "auto",
custom_patterns = NULL,
taxonomy_levels = NULL,
delimiter_mode = "reverse"
)Arguments
- labels
Character vector of tip labels
- format
Format: "auto", "embedded", "GTDB", "Silva", "NCBI", "custom_rank", "custom_regex"
- custom_patterns
Custom regex patterns (for "custom_regex" format)
- taxonomy_levels
Custom taxonomy level configuration
- delimiter_mode
Character. Embedded parsing strategy: "reverse", "greedy", "segment".